Free and open-source tool for reproducible image analysis with easy batch processing
PartSeg is available as a Python package and standalone application.
pip install partseg
or uv pip install partseg
conda install partseg
or mamba install partseg
Currently we do not have certificates for macOS applications, so you need to allow running them in system settings.
Older releases of bundles could be obtained from GitHub releases
We would love to collect feedback from user to improve PartSeg development.
Validate your workflow on few data points, then convert to batch, then run again after a year without any problem
Grzegorz Bokota - main developer, responsible for PartSeg development and maintenance. Orcid: 0000-0002-5470-1676
PartSeg plugin for smFISH analysis Publication link: https://doi.org/10.15252/embj.2022112443
Plugin for analysis of neutrophils NET data. Publication link https://doi.org/10.3389/fimmu.2023.1021638