Reproducible 3D image analysis.

Free and open-source tool for reproducible image analysis with easy batch processing

Python powered napari powered

Obtain PartSeg

PartSeg is available as a Python package and standalone application.

  • Python package
    PartSeg is available on PyPi and can be installed using command: pip install partseg or uv pip install partseg
  • Conda package
    PartSeg is available on conda and can be installed using command: conda install partseg or mamba install partseg
  • Bundled application
    There are available bundled applications for macOS, Windows and Linux. You can download them:

    Currently we do not have certificates for macOS applications, so you need to allow running them in system settings.

    Older releases of bundles could be obtained from GitHub releases

We collect information to help us develop PartSeg

We would love to collect feedback from user to improve PartSeg development.

  • Dynamic reports and dashboards
  • Templates for everyone
  • Development workflow
  • Limitless business automation
  • Knowledge management

Features

  • Batch Processing
  • Preserve algorithm parameters between sessions (with migrations)
  • Easy convert analysis to workflows
  • Flexible measurements
  • Plugins

Validate your workflow on few data points, then convert to batch, then run again after a year without any problem

Team

Grzegorz Bokota - main developer, responsible for PartSeg development and maintenance. Orcid: 0000-0002-5470-1676